This brochure presents a sample of Berkeley Lab software tools that can accelerate discovery and hasten products-to-market in the biosciences. Some of this software is available open source and some through commercial licenses. Click on this brochure for more information about these software tools.
Click here to download the brochure.
Table of Contents
*open source
Imaging
BASTet and OpenMSI Arrayed Analysis Tools for Mass Spectrometry
SPECT: Software for Dynamic Imaging with Single-Photon Emission Computed Tomography Scanners
LABELIT: Software for Macromolecular Diffraction Data Processing
PHENIX: Software for Determining Macromolecular Structure Using Crystallographic or Cryo-EM Data
Omics
basecRAWller: Nanopore Sequencing Base Calling Software
MAGI: Metabolite, Annotation and Gene Integration System and Software*
OMG: Multi-Omics Data Library for Predictive Modeling*
EDD: Web-based Software for Biological Experimental Data Storage and Visualization*
DelPlasmid: Finding Plasmids with Deep Learning and Machine Learning*
Synthetic Biology
DIVA: DNA Design, Implementation, and Validation Automation Software
BOOST: Build Optimization Software Tools for DNA Sequence Design
SynTrack: DNA Assembly Workflow Management
ART: A Machine Learning Automated Recommendation Tool for Guiding Synthetic Biology
ClusterCAD: Computational Platform for Design of Chimeric Polyketide Synthase (PKS)*
ICE: Inventory of Composable Elements and Web of Registries, Bioparts Search Portal*
High Performance Computing
JAWS: Joint Genome Institute Analysis Workflow Service for Complex Computational Pipelines on Multiple Compute Resources*