APPLICATIONS OF TECHNOLOGY: Any application that involves using DNA sequencing machines. BENEFITS: Allow substantial increase in yield of DNA sequencing machines without increasing crosstalk BACKGROUND: For genetic sequencing, DNA from an actual genome is tagged with a synthetic barcode. This allows multiple experiments from many sources to be physically pooled … [Read more...] about NovaDemux Software: Error-Tolerant Sequence Demultiplexer for Increased Yield of DNA Sequencing Machines 2024-089, 2024-091
Biotech Software
Biological Sciences Software
This brochure presents a sample of Berkeley Lab software tools that can accelerate discovery and hasten products-to-market in the biosciences. Some of this software is available open source and some through commercial licenses. Click on this brochure for more information about these software tools. Click here to download the brochure. Table of … [Read more...] about Biological Sciences Software
Registries of Biological Parts: Inventory of Composable Elements (ICE) and Web of Registries, Bioparts Search Portal 2639
APPLICATIONS OF TECHNOLOGY: Search, storage, and management of databases of biological parts and associated sequences Visualisation of biological part sequences BENEFITS: Efficient sourcing and management of data Facilitates data sharing and exchange TECHNOLOGY OVERVIEW: ICE and Web of Registries The Inventory of Composable Elements (ICE) is an open … [Read more...] about Registries of Biological Parts: Inventory of Composable Elements (ICE) and Web of Registries, Bioparts Search Portal 2639
basecRAWller: Nanopore Sequencing Base Calling Software 2017-075
APPLICATIONS: Nanopore sequencing (i.e. significantly more accurate base caller for nanopore data) BENEFITS: Streaming base calling Base calling from information-rich raw signal BACKGROUND: Nanopore applications require base calling. Current nanopore base calling software applications employ the Viterbi algorithm, which requires the whole sequence to … [Read more...] about basecRAWller: Nanopore Sequencing Base Calling Software 2017-075
DIVA: DNA Design, Implementation, and Validation Automation Software 2021-102
APPLICATIONS: DNA design, DNA construction, synthetic biology, engineering biology, efficiency metric tracking BENEFITS: Provides a collaborative web-based graphical user interface supporting and tracking DNA design and construction. Interfaces with other related enabling software to offer additional functionality and reduce friction for the … [Read more...] about DIVA: DNA Design, Implementation, and Validation Automation Software 2021-102