To address challenges related to comprehensive annotation and quantification of transcriptomes, Rnnotator was developed by a team at the Joint Genomics Institute (JGI) to provide an automated software pipeline that generates transcript models by de novo assembly of RNA-Seq data without the need for a reference genome.
STATUS: Copyrighted. Available for license.
FOR MORE INFORMATION:
Martin, J., Bruno, V.M., Fang, Z., Meng, X., Blow, M., Zhang, T., Sherlock, G., Snyder, M., Wang, Z. “Rnnotator: an automated de novo transcriptome assembly pipeline from stranded RNA-Seq reads,” BMC Genomics, 2010, 11:663.
REFERENCE NUMBER: 2013-093