APPLICATIONS OF TECHNOLOGY: Microbiome engineering for medicine, agriculture, biomanufacturing and renewable energy Pharmaceutical synthesis Commodity chemical and biofuel production Livestock research and development ADVANTAGES: Enables high-throughput, stable, accurate, efficient gene integration and expression of very large DNA constructs (e.g., … [Read more...] about A Universal Approach to Integrate and Express Pathways in a Broad Range of Bacteria 2016-024
Biotech Software
Identifying Sources of Microbial Contamination in Environmental Samples WIB-3205
APPLICATIONS OF TECHNOLOGY: Water quality testing Health and human safety Environmental cleanup Oil reservoir sulfate optimization Homeland security Diagnosis and treatment of disease ADVANTAGES: Accurately identifies all known bacteria and archaea Accurately quantifies high- and low-abundance taxa Reproducible for multiple replicates Built-in … [Read more...] about Identifying Sources of Microbial Contamination in Environmental Samples WIB-3205
Rnnotator 3.0 Software 2013-093
ABSTRACT: To address challenges related to comprehensive annotation and quantification of transcriptomes, Rnnotator was developed by a team at the Joint Genomics Institute (JGI) to provide an automated software pipeline that generates transcript models by de novo assembly of RNA-Seq data without the need for a reference genome. STATUS: Copyrighted. Available for … [Read more...] about Rnnotator 3.0 Software 2013-093
OpenMSI – Advanced Visualization, Analysis and Management of Mass Spectrometry Imaging Data via the Web 2013-004
APPLICATIONS OF TECHNOLOGY: For mass spectrometry imaging (MSI) data Web-based management and storage Visualiztion of hyper-dimensional contents Statistical analysis ADVANTAGES: Combines biotechnology expertise with high performance computing ABSTRACT: OpenMSI's goal is to make the most high-performance, advanced data management, model building, … [Read more...] about OpenMSI – Advanced Visualization, Analysis and Management of Mass Spectrometry Imaging Data via the Web 2013-004
BioSig3D: Software for Integrated Imaging and Profiling of 3D Cell Culture Models 2013-177, 2014-024
APPLICATIONS: Analysis of 3D cell culture model systems Oncology research and drug development Couples novel image analysis algorithms with 3D microscopy ADVANTAGES: End-to-end solution -- from assay to bioinformatics Enables 3D visualization and analysis of 3D spatial data Quantifies subcellular morphometric indices and corresponding molecular endpoints, on … [Read more...] about BioSig3D: Software for Integrated Imaging and Profiling of 3D Cell Culture Models 2013-177, 2014-024